===> Wed Sep 28 17:20:05 BST 2016 Starting ru
===> Wed Sep 28 17:20:05 BST 2016 Configuring ru
configure.php: $Id: configure.php 337463 2015-08-14 23:54:15Z cmb $
PHP version: 5.3.3

Checking for source directory... /local/src/phpdoc-all/doc-base
Checking for output filename... /local/src/phpdoc-all//doc-base/2016-09-28-16-ru.xml
Checking whether to include CHM... no
Checking for PHP executable... /usr/bin/php
Checking for language to build... ru
Checking whether the language is supported... yes
Checking for partial build... no
Checking whether to enable detailed XML error messages... no
Checking libxml version... 2.7.6
Checking whether to enable detailed error reporting (may segfault)... yes
Checking whether to optimize out the DTD (performance gain, but segfaults)... no
Generating /local/src/phpdoc-all/doc-base/manual.xml... done
Generating /local/src/phpdoc-all/doc-base/install-unix.xml... done
Generating /local/src/phpdoc-all/doc-base/install-win.xml... done
Generating /local/src/phpdoc-all/doc-base/developer.template.xml... done
Generating /local/src/phpdoc-all/doc-base/scripts/file-entities.php... done
Iterating over extension specific version files... OK
Saving it... OK
Creating file /local/src/phpdoc-all/doc-base/entities/file-entities.ent... done
Checking for if we should generate a simplified file... no
Checking whether to save an invalid .manual.xml... no
Loading and parsing manual.xml... done.
Validating manual.xml... failed.

The document didn't validate, here are the errors I got:
(If this isn't enough information, try again with --enable-xml-details)
 ID ini.url-rewriter.tags already defined
 IDREF attribute linkend references an unknown ID "ini.session.trans-sid-hosts"
 IDREF attribute linkend references an unknown ID "ini.session.trans-sid-hosts"
 IDREF attribute linkend references an unknown ID "ini.session.trans-sid-tags"
 IDREF attribute linkend references an unknown ID "ini.session.trans-sid-tags"
 IDREF attribute linkend references an unknown ID "ini.session.trans-sid-tags"
 IDREF attribute linkend references an unknown ID "ini.cgi.discard-path"
 IDREF attribute linkend references an unknown ID "ini.cgi.nph"

Eyh man. No worries. Happ shittens. Try again after fixing the errors above.
=============> Something happenend when snapshotting ru
Failed completely
=============> Please have a look!
=============> Something happenend when snapshotting ru
Failed configuring ru
=============> Please have a look!
===> Wed Sep 28 17:21:43 BST 2016 Cleaning /local/src/phpdoc-all//doc-base/2016-09-28-16-ru.xml