===> Tue Nov  5 00:42:13 GMT 2013 Starting ro
===> Tue Nov  5 00:42:13 GMT 2013 Configuring ro
configure.php: $Id: configure.php 330577 2013-06-20 23:22:04Z bjori $
PHP version: 5.3.3

Checking for source directory... /local/src/phpdoc-all/doc-base
Checking for output filename... /local/src/phpdoc-all//doc-base/2013-11-05-00-ro.xml
Checking whether to include CHM... no
Checking for PHP executable... /usr/bin/php
Checking for language to build... ro
Checking whether the language is supported... yes
Checking for partial build... no
Checking whether to enable detailed XML error messages... no
Checking libxml version... 2.7.6
Checking whether to enable detailed error reporting (may segfault)... yes
Checking whether to optimize out the DTD (performance gain, but segfaults)... no
Generating /local/src/phpdoc-all/doc-base/manual.xml... done
Generating /local/src/phpdoc-all/doc-base/install-unix.xml... done
Generating /local/src/phpdoc-all/doc-base/install-win.xml... done
Generating /local/src/phpdoc-all/doc-base/developer.template.xml... done
Generating /local/src/phpdoc-all/doc-base/scripts/file-entities.php... done
Iterating over extension specific version files... OK
Saving it... OK
Creating file /local/src/phpdoc-all/doc-base/entities/file-entities.ent... done
Checking for if we should generate a simplified file... no
Checking whether to save an invalid .manual.xml... no
Loading and parsing manual.xml... done.
Validating manual.xml... failed.

The document didn't validate, here are the errors I got:
(If this isn't enough information, try again with --enable-xml-details)
 ID oci-collection.append already defined
 ID oci-collection.assign already defined
 ID oci-collection.assignelem already defined
 ID oci-collection.free already defined
 ID oci-collection.getelem already defined
 ID oci-collection.max already defined
 ID oci-collection.size already defined
 ID oci-collection.trim already defined
 ID oci-lob.append already defined
 ID oci-lob.close already defined
 ID oci-lob.eof already defined
 ID oci-lob.erase already defined
 ID oci-lob.export already defined
 ID oci-lob.flush already defined
 ID oci-lob.free already defined
 ID oci-lob.getbuffering already defined
 ID oci-lob.import already defined
 ID oci-lob.load already defined
 ID oci-lob.read already defined
 ID oci-lob.rewind already defined
 ID oci-lob.save already defined
 ID oci-lob.savefile already defined
 ID oci-lob.seek already defined
 ID oci-lob.setbuffering already defined
 ID oci-lob.size already defined
 ID oci-lob.tell already defined
 ID oci-lob.truncate already defined
 ID oci-lob.write already defined
 ID oci-lob.writetemporary already defined
 ID oci-lob.writetofile already defined
 IDREF attribute linkend references an unknown ID
 "constant.json-error-unsupported-type"
 IDREF attribute linkend references an unknown ID
 "constant.json-error-recursion"
 IDREF attribute linkend references an unknown ID
 "constant.json-error-inf-or-nan"

Eyh man. No worries. Happ shittens. Try again after fixing the errors above.
=============> Something happenend when snapshotting ro
Failed completely
=============> Please have a look!
=============> Something happenend when snapshotting ro
Failed configuring ro
=============> Please have a look!
===> Tue Nov  5 00:42:58 GMT 2013 Cleaning /local/src/phpdoc-all//doc-base/2013-11-05-00-ro.xml